No. words: 1836; after pruning: 1796


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.0 (1,1:1696)  137  0.00 0.00 0.00  USDA025F_B07_BE445834Td02P043G12P017F071F1_061.ab1      760   898 (0)  C USDA025R_B07_BE445834Td02P043G12P017F071R1_061.ab1   (0)   938   800 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  72 nodes

 38 str. conn. components

Path
    1    USDA025F_B07_BE445834Td02P043G12P017F071F1_061.ab1     1 
  799  C USDA025R_B07_BE445834Td02P043G12P017F071R1_061.ab1   899 
  815    USDA025F_B07_BE445834Td02P043G12P017F071F1_061.ab1   815 
  823  C USDA025R_B07_BE445834Td02P043G12P017F071R1_061.ab1   875 
  831    USDA025F_B07_BE445834Td02P043G12P017F071F1_061.ab1   831 
  835  C USDA025R_B07_BE445834Td02P043G12P017F071R1_061.ab1   863 
  839    USDA025F_B07_BE445834Td02P043G12P017F071F1_061.ab1   839 
  847  C USDA025R_B07_BE445834Td02P043G12P017F071R1_061.ab1   851 
  871    USDA025F_B07_BE445834Td02P043G12P017F071F1_061.ab1   871 
  875  C USDA025R_B07_BE445834Td02P043G12P017F071R1_061.ab1   823 
  883    USDA025F_B07_BE445834Td02P043G12P017F071F1_061.ab1   883 
  887  C USDA025R_B07_BE445834Td02P043G12P017F071R1_061.ab1   811 
Contig length: old 1697, new 1697

Contig length: old 1697, new 1697
New start: 0 
S Change at: 1216; seg lengths: entry 1, contig 1