No. words: 970; after pruning: 944


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.0 (1,1:468)  453  0.00 0.00 0.21  USDA002F_A07_BE446240Tu01P004C02C08F1_049.ab1        1   469 (18)  C USDA002R_A07_BE446240Tu01P004C02C08R1_049.ab1   (15)   468     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  234 nodes

 119 str. conn. components

Path
    1  C USDA002R_A07_BE446240Tu01P004C02C08R1_049.ab1   483 
   19    USDA002F_A07_BE446240Tu01P004C02C08F1_049.ab1     4 
   23  C USDA002R_A07_BE446240Tu01P004C02C08R1_049.ab1   461 
   27    USDA002F_A07_BE446240Tu01P004C02C08F1_049.ab1    12 
   35  C USDA002R_A07_BE446240Tu01P004C02C08R1_049.ab1   449 
   51    USDA002F_A07_BE446240Tu01P004C02C08F1_049.ab1    36 
   71  C USDA002R_A07_BE446240Tu01P004C02C08R1_049.ab1   413 
   95    USDA002F_A07_BE446240Tu01P004C02C08F1_049.ab1    80 
   99  C USDA002R_A07_BE446240Tu01P004C02C08R1_049.ab1   385 
  103    USDA002F_A07_BE446240Tu01P004C02C08F1_049.ab1    88 
  111  C USDA002R_A07_BE446240Tu01P004C02C08R1_049.ab1   373 
  115    USDA002F_A07_BE446240Tu01P004C02C08F1_049.ab1   100 
  123  C USDA002R_A07_BE446240Tu01P004C02C08R1_049.ab1   361 
  135    USDA002F_A07_BE446240Tu01P004C02C08F1_049.ab1   120 
  147  C USDA002R_A07_BE446240Tu01P004C02C08R1_049.ab1   337 
  167    USDA002F_A07_BE446240Tu01P004C02C08F1_049.ab1   152 
  171  C USDA002R_A07_BE446240Tu01P004C02C08R1_049.ab1   313 
  175    USDA002F_A07_BE446240Tu01P004C02C08F1_049.ab1   160 
  191  C USDA002R_A07_BE446240Tu01P004C02C08R1_049.ab1   293 
  195    USDA002F_A07_BE446240Tu01P004C02C08F1_049.ab1   180 
  219  C USDA002R_A07_BE446240Tu01P004C02C08R1_049.ab1   265 
  227    USDA002F_A07_BE446240Tu01P004C02C08F1_049.ab1   212 
  235  C USDA002R_A07_BE446240Tu01P004C02C08R1_049.ab1   249 
  243    USDA002F_A07_BE446240Tu01P004C02C08F1_049.ab1   228 
  247  C USDA002R_A07_BE446240Tu01P004C02C08R1_049.ab1   237 
  255    USDA002F_A07_BE446240Tu01P004C02C08F1_049.ab1   240 
  267  C USDA002R_A07_BE446240Tu01P004C02C08R1_049.ab1   217 
  271    USDA002F_A07_BE446240Tu01P004C02C08F1_049.ab1   256 
  279  C USDA002R_A07_BE446240Tu01P004C02C08R1_049.ab1   205 
  287    USDA002F_A07_BE446240Tu01P004C02C08F1_049.ab1   272 
  327  C USDA002R_A07_BE446240Tu01P004C02C08R1_049.ab1   157 
  339    USDA002F_A07_BE446240Tu01P004C02C08F1_049.ab1   324 
  347  C USDA002R_A07_BE446240Tu01P004C02C08R1_049.ab1   137 
  359    USDA002F_A07_BE446240Tu01P004C02C08F1_049.ab1   344 
  371  C USDA002R_A07_BE446240Tu01P004C02C08R1_049.ab1   113 
  379    USDA002F_A07_BE446240Tu01P004C02C08F1_049.ab1   364 
  383  C USDA002R_A07_BE446240Tu01P004C02C08R1_049.ab1   101 
  387    USDA002F_A07_BE446240Tu01P004C02C08F1_049.ab1   372 
  407  C USDA002R_A07_BE446240Tu01P004C02C08R1_049.ab1    77 
  419    USDA002F_A07_BE446240Tu01P004C02C08F1_049.ab1   404 
  447  C USDA002R_A07_BE446240Tu01P004C02C08R1_049.ab1    37 
  451    USDA002F_A07_BE446240Tu01P004C02C08F1_049.ab1   436 
Contig length: old 501, new 502

Contig length: old 502, new 502
New start: 0