No. words: 294; after pruning: 254


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 1.7 (1,1:78)   78  1.27 0.00 0.00  USDA015F_A09_BE494850Ta17P035H04P004A071F1_079.ab1        1    79 (84)  C USDA015R_A09_BE494850Ta17P035H04P004A071R1_079.ab1   (52)    79     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  38 nodes

 21 str. conn. components

Path
    1  C USDA015R_A09_BE494850Ta17P035H04P004A071R1_079.ab1   131 
   71    USDA015F_A09_BE494850Ta17P035H04P004A071F1_079.ab1    19 
   79  C USDA015R_A09_BE494850Ta17P035H04P004A071R1_079.ab1    53 
   83    USDA015F_A09_BE494850Ta17P035H04P004A071F1_079.ab1    31 
   99  C USDA015R_A09_BE494850Ta17P035H04P004A071R1_079.ab1    33 
  103    USDA015F_A09_BE494850Ta17P035H04P004A071F1_079.ab1    51 
Contig length: old 215, new 215

Contig length: old 215, new 215
New start: 0 
S Change at: 59; seg lengths: entry 1, contig 1