No. words: 1319; after pruning: 1293


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.7 (1,1:1130)  174  1.06 0.00 0.00  USDA031F_G01_BE495997Ld01P004G04P004G101F3_003.ab1      747   934 (0)  C USDA031R_G01_BE495997Ld01P004G04P004G101R3_003.ab1   (0)   385   198 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  90 nodes

 47 str. conn. components

Path
    1    USDA031F_G01_BE495997Ld01P004G04P004G101F3_003.ab1     1 
  815  C USDA031R_G01_BE495997Ld01P004G04P004G101R3_003.ab1   317 
  823    USDA031F_G01_BE495997Ld01P004G04P004G101F3_003.ab1   823 
  827  C USDA031R_G01_BE495997Ld01P004G04P004G101R3_003.ab1   305 
  831    USDA031F_G01_BE495997Ld01P004G04P004G101F3_003.ab1   831 
  839  C USDA031R_G01_BE495997Ld01P004G04P004G101R3_003.ab1   293 
  855    USDA031F_G01_BE495997Ld01P004G04P004G101F3_003.ab1   855 
  859  C USDA031R_G01_BE495997Ld01P004G04P004G101R3_003.ab1   273 
Contig length: old 1131, new 1131

Contig length: old 1131, new 1131
New start: 0