No. words: 865; after pruning: 839


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 0.8 (1,1:277)  259  0.00 0.00 0.00  USDA031F_A02_BE495997Ld03P004G04P004G101F3_016.ab1        5   273 (173)  C USDA031R_A02_BE495997Ld03P004G04P004G101R3_016.ab1   (145)   274     6 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  132 nodes

 68 str. conn. components

Path
    1  C USDA031R_A02_BE495997Ld03P004G04P004G101R3_016.ab1   419 
  265    USDA031F_A02_BE495997Ld03P004G04P004G101F3_016.ab1   124 
Contig length: old 587, new 587

Contig length: old 587, new 587
New start: 0