No. words: 1090; after pruning: 1064


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.8 (1,1:489)  471  0.00 0.20 0.00  USDA021F_E09_BE497177Ta21P043D06P004F051F1_071.ab1        1   490 (54)  C USDA021R_E09_BE497177Ta21P043D06P004F051R1_071.ab1   (55)   491     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  242 nodes

 123 str. conn. components

Path
    1  C USDA021R_E09_BE497177Ta21P043D06P004F051R1_071.ab1   546 
   92    USDA021F_E09_BE497177Ta21P043D06P004F051F1_071.ab1    36 
  124  C USDA021R_E09_BE497177Ta21P043D06P004F051R1_071.ab1   423 
  132    USDA021F_E09_BE497177Ta21P043D06P004F051F1_071.ab1    76 
  144  C USDA021R_E09_BE497177Ta21P043D06P004F051R1_071.ab1   403 
  148    USDA021F_E09_BE497177Ta21P043D06P004F051F1_071.ab1    92 
  152  C USDA021R_E09_BE497177Ta21P043D06P004F051R1_071.ab1   395 
  156    USDA021F_E09_BE497177Ta21P043D06P004F051F1_071.ab1   100 
  168  C USDA021R_E09_BE497177Ta21P043D06P004F051R1_071.ab1   379 
  172    USDA021F_E09_BE497177Ta21P043D06P004F051F1_071.ab1   116 
  204  C USDA021R_E09_BE497177Ta21P043D06P004F051R1_071.ab1   343 
  212    USDA021F_E09_BE497177Ta21P043D06P004F051F1_071.ab1   156 
Contig length: old 600, new 600

Contig length: old 600, new 600
New start: 0