No. words: 841; after pruning: 815


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Rjct: (2)    1   -5.5 -5.5 (1,1:217)  132 12.04 0.46 0.00  USDA007_E06_BE498820Ld07P017C03C09F1_040.ab1        3   218 (240)  C USDA007_E12_BE498820Ld07P017C03C09R1_088.ab1   (166)   217     1 *
  Worst pair: offset 1 
LLR breakdown: discreps: -8.6 (<20 part: -6.4 (#=26), >20:-2.2 (#=1); in HQ: -8.6, out HQ 0.0), match: 4.2  lead: -1.2  total: -5.6  132 12.04 0.46 0.00  USDA007_E06_BE498820Ld07P017C03C09F1_040.ab1        3   218 (240)  C USDA007_E12_BE498820Ld07P017C03C09R1_088.ab1   (166)   217     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-5.5       0        1

Gap   # merges  # failures
 size
 1       0        1

Offset
  1       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 2:  2 nodes

 2 str. conn. components

Path
    1    USDA007_E12_BE498820Ld07P017C03C09R1_088.ab1     1 
Contig length: old 383, new 383

Contig 1:  2 nodes

 2 str. conn. components

Path
    1    USDA007_E06_BE498820Ld07P017C03C09F1_040.ab1     1 
Contig length: old 458, new 458