No. words: 1683; after pruning: 1644


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 2.5 (1,1:310)  280  2.91 0.00 0.00  USDA004F_F04_BE500714Ld08P004B04B10F1_031.ab1        1   309 (107)  C USDA004R_F04_BE500714Ld08P004B04B10R1_031.ab1   (205)   311     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    1
    2    1

Chimera merges: 


Contig 1:  134 nodes

 69 str. conn. components

Path
    1  C USDA004R_F04_BE500714Ld08P004B04B10R1_031.ab1   516 
  508    USDA004F_F04_BE500714Ld08P004B04B10F1_031.ab1   303 
Contig length: old 621, new 621

Contig length: old 621, new 621
New start: 0