No. words: 1224; after pruning: 1198


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.8 (1,1:574)  563  0.00 0.00 0.00  USDA027F_C01_BE500714Td03P035C06P004B101F1_011.ab1        1   575 (51)  C USDA027R_C01_BE500714Td03P035C06P004B101R1_011.ab1   (23)   575     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  290 nodes

 147 str. conn. components

Path
    1  C USDA027R_C01_BE500714Td03P035C06P004B101R1_011.ab1   598 
   55    USDA027F_C01_BE500714Td03P035C06P004B101F1_011.ab1    32 
   59  C USDA027R_C01_BE500714Td03P035C06P004B101R1_011.ab1   540 
   95    USDA027F_C01_BE500714Td03P035C06P004B101F1_011.ab1    72 
   99  C USDA027R_C01_BE500714Td03P035C06P004B101R1_011.ab1   500 
  107    USDA027F_C01_BE500714Td03P035C06P004B101F1_011.ab1    84 
  119  C USDA027R_C01_BE500714Td03P035C06P004B101R1_011.ab1   480 
  215    USDA027F_C01_BE500714Td03P035C06P004B101F1_011.ab1   192 
  263  C USDA027R_C01_BE500714Td03P035C06P004B101R1_011.ab1   336 
  595    USDA027F_C01_BE500714Td03P035C06P004B101F1_011.ab1   572 
Contig length: old 649, new 649

Contig length: old 649, new 649
New start: 0