No. words: 1213; after pruning: 1173


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.3 (1,1:560)  544  0.18 0.00 0.18  USDA027F_G01_BE500714Td07P035C06P004B101F1_003.ab1        1   561 (43)  C USDA027R_G01_BE500714Td07P035C06P004B101R1_003.ab1   (49)   560     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  276 nodes

 140 str. conn. components

Path
    1  C USDA027R_G01_BE500714Td07P035C06P004B101R1_003.ab1   609 
   65    USDA027F_G01_BE500714Td07P035C06P004B101F1_003.ab1    16 
   69  C USDA027R_G01_BE500714Td07P035C06P004B101R1_003.ab1   541 
   81    USDA027F_G01_BE500714Td07P035C06P004B101F1_003.ab1    32 
   85  C USDA027R_G01_BE500714Td07P035C06P004B101R1_003.ab1   525 
   97    USDA027F_G01_BE500714Td07P035C06P004B101F1_003.ab1    48 
  101  C USDA027R_G01_BE500714Td07P035C06P004B101R1_003.ab1   509 
  105    USDA027F_G01_BE500714Td07P035C06P004B101F1_003.ab1    56 
  133  C USDA027R_G01_BE500714Td07P035C06P004B101R1_003.ab1   477 
  149    USDA027F_G01_BE500714Td07P035C06P004B101F1_003.ab1   100 
  153  C USDA027R_G01_BE500714Td07P035C06P004B101R1_003.ab1   457 
  165    USDA027F_G01_BE500714Td07P035C06P004B101F1_003.ab1   116 
  233  C USDA027R_G01_BE500714Td07P035C06P004B101R1_003.ab1   377 
  237    USDA027F_G01_BE500714Td07P035C06P004B101F1_003.ab1   188 
  277  C USDA027R_G01_BE500714Td07P035C06P004B101R1_003.ab1   333 
  285    USDA027F_G01_BE500714Td07P035C06P004B101F1_003.ab1   236 
  293  C USDA027R_G01_BE500714Td07P035C06P004B101R1_003.ab1   317 
  353    USDA027F_G01_BE500714Td07P035C06P004B101F1_003.ab1   304 
  365  C USDA027R_G01_BE500714Td07P035C06P004B101R1_003.ab1   245 
  373    USDA027F_G01_BE500714Td07P035C06P004B101F1_003.ab1   324 
  377  C USDA027R_G01_BE500714Td07P035C06P004B101R1_003.ab1   233 
  436    USDA027F_G01_BE500714Td07P035C06P004B101F1_003.ab1   387 
  452  C USDA027R_G01_BE500714Td07P035C06P004B101R1_003.ab1   158 
  496    USDA027F_G01_BE500714Td07P035C06P004B101F1_003.ab1   447 
  504  C USDA027R_G01_BE500714Td07P035C06P004B101R1_003.ab1   106 
  516    USDA027F_G01_BE500714Td07P035C06P004B101F1_003.ab1   467 
  524  C USDA027R_G01_BE500714Td07P035C06P004B101R1_003.ab1    86 
  564    USDA027F_G01_BE500714Td07P035C06P004B101F1_003.ab1   515 
  576  C USDA027R_G01_BE500714Td07P035C06P004B101R1_003.ab1    34 
  584    USDA027F_G01_BE500714Td07P035C06P004B101F1_003.ab1   535 
Contig length: old 652, new 653

Contig length: old 653, new 653
New start: 0