No. words: 1231; after pruning: 1163


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 11.6 (1,1:584)  549  1.20 0.00 0.17  USDA027F_H04_BE500714Td08P035D06P004B101F1_018.ab1        1   584 (38)  C USDA027R_H04_BE500714Td08P035D06P004B101R1_018.ab1   (25)   584     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  270 nodes

 137 str. conn. components

Path
    1  C USDA027R_H04_BE500714Td08P035D06P004B101R1_018.ab1   609 
   81    USDA027F_H04_BE500714Td08P035D06P004B101F1_018.ab1    56 
   85  C USDA027R_H04_BE500714Td08P035D06P004B101R1_018.ab1   525 
  129    USDA027F_H04_BE500714Td08P035D06P004B101F1_018.ab1   104 
  133  C USDA027R_H04_BE500714Td08P035D06P004B101R1_018.ab1   477 
  137    USDA027F_H04_BE500714Td08P035D06P004B101F1_018.ab1   112 
  286  C USDA027R_H04_BE500714Td08P035D06P004B101R1_018.ab1   324 
  298    USDA027F_H04_BE500714Td08P035D06P004B101F1_018.ab1   273 
  306  C USDA027R_H04_BE500714Td08P035D06P004B101R1_018.ab1   304 
  355    USDA027F_H04_BE500714Td08P035D06P004B101F1_018.ab1   330 
  375  C USDA027R_H04_BE500714Td08P035D06P004B101R1_018.ab1   235 
  432    USDA027F_H04_BE500714Td08P035D06P004B101F1_018.ab1   407 
  436  C USDA027R_H04_BE500714Td08P035D06P004B101R1_018.ab1   174 
  493    USDA027F_H04_BE500714Td08P035D06P004B101F1_018.ab1   468 
  509  C USDA027R_H04_BE500714Td08P035D06P004B101R1_018.ab1   101 
  513    USDA027F_H04_BE500714Td08P035D06P004B101F1_018.ab1   488 
  517  C USDA027R_H04_BE500714Td08P035D06P004B101R1_018.ab1    93 
  529    USDA027F_H04_BE500714Td08P035D06P004B101F1_018.ab1   504 
  533  C USDA027R_H04_BE500714Td08P035D06P004B101R1_018.ab1    77 
  541    USDA027F_H04_BE500714Td08P035D06P004B101F1_018.ab1   516 
  545  C USDA027R_H04_BE500714Td08P035D06P004B101R1_018.ab1    65 
  567    USDA027F_H04_BE500714Td08P035D06P004B101F1_018.ab1   542 
  571  C USDA027R_H04_BE500714Td08P035D06P004B101R1_018.ab1    39 
  579    USDA027F_H04_BE500714Td08P035D06P004B101F1_018.ab1   554 
Contig length: old 646, new 647

Contig length: old 647, new 647
New start: 0