No. words: 1229; after pruning: 1189


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.7 (1,1:571)  556  0.17 0.00 0.00  USDA027F_A05_BE500714Td09P035D06P004B101F1_047.ab1        1   572 (51)  C USDA027R_A05_BE500714Td09P035D06P004B101R1_047.ab1   (34)   572     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  284 nodes

 144 str. conn. components

Path
    1  C USDA027R_A05_BE500714Td09P035D06P004B101R1_047.ab1   606 
  162    USDA027F_A05_BE500714Td09P035D06P004B101F1_047.ab1   128 
  166  C USDA027R_A05_BE500714Td09P035D06P004B101R1_047.ab1   441 
  298    USDA027F_A05_BE500714Td09P035D06P004B101F1_047.ab1   264 
  302  C USDA027R_A05_BE500714Td09P035D06P004B101R1_047.ab1   305 
  390    USDA027F_A05_BE500714Td09P035D06P004B101F1_047.ab1   356 
  398  C USDA027R_A05_BE500714Td09P035D06P004B101R1_047.ab1   209 
  422    USDA027F_A05_BE500714Td09P035D06P004B101F1_047.ab1   388 
  470  C USDA027R_A05_BE500714Td09P035D06P004B101R1_047.ab1   137 
  482    USDA027F_A05_BE500714Td09P035D06P004B101F1_047.ab1   448 
  494  C USDA027R_A05_BE500714Td09P035D06P004B101R1_047.ab1   113 
  502    USDA027F_A05_BE500714Td09P035D06P004B101F1_047.ab1   468 
  542  C USDA027R_A05_BE500714Td09P035D06P004B101R1_047.ab1    65 
  558    USDA027F_A05_BE500714Td09P035D06P004B101F1_047.ab1   524 
  566  C USDA027R_A05_BE500714Td09P035D06P004B101R1_047.ab1    41 
  577    USDA027F_A05_BE500714Td09P035D06P004B101F1_047.ab1   543 
  585  C USDA027R_A05_BE500714Td09P035D06P004B101R1_047.ab1    22 
  589    USDA027F_A05_BE500714Td09P035D06P004B101F1_047.ab1   555 
Contig length: old 657, new 657

Contig length: old 657, new 657
New start: 0