No. words: 1646; after pruning: 1620


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.7 (1,1:782)  745  0.00 0.00 0.26  USDA034F_D02_BE518358Ta12P035F06P017H101F1_010.ab1        1   784 (31)  C USDA034R_D02_BE518358Ta12P035F06P017H101R1_010.ab1   (49)   782     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  386 nodes

 195 str. conn. components

Path
    1  C USDA034R_D02_BE518358Ta12P035F06P017H101R1_010.ab1   831 
   58    USDA034F_D02_BE518358Ta12P035F06P017H101F1_010.ab1     9 
   62  C USDA034R_D02_BE518358Ta12P035F06P017H101R1_010.ab1   770 
   70    USDA034F_D02_BE518358Ta12P035F06P017H101F1_010.ab1    21 
  106  C USDA034R_D02_BE518358Ta12P035F06P017H101R1_010.ab1   726 
  110    USDA034F_D02_BE518358Ta12P035F06P017H101F1_010.ab1    61 
  130  C USDA034R_D02_BE518358Ta12P035F06P017H101R1_010.ab1   702 
  134    USDA034F_D02_BE518358Ta12P035F06P017H101F1_010.ab1    85 
  138  C USDA034R_D02_BE518358Ta12P035F06P017H101R1_010.ab1   694 
  146    USDA034F_D02_BE518358Ta12P035F06P017H101F1_010.ab1    97 
  154  C USDA034R_D02_BE518358Ta12P035F06P017H101R1_010.ab1   678 
  222    USDA034F_D02_BE518358Ta12P035F06P017H101F1_010.ab1   173 
  226  C USDA034R_D02_BE518358Ta12P035F06P017H101R1_010.ab1   606 
  242    USDA034F_D02_BE518358Ta12P035F06P017H101F1_010.ab1   193 
  262  C USDA034R_D02_BE518358Ta12P035F06P017H101R1_010.ab1   570 
  266    USDA034F_D02_BE518358Ta12P035F06P017H101F1_010.ab1   217 
  282  C USDA034R_D02_BE518358Ta12P035F06P017H101R1_010.ab1   550 
  286    USDA034F_D02_BE518358Ta12P035F06P017H101F1_010.ab1   237 
  290  C USDA034R_D02_BE518358Ta12P035F06P017H101R1_010.ab1   542 
  810    USDA034F_D02_BE518358Ta12P035F06P017H101F1_010.ab1   761 
Contig length: old 863, new 864

Contig length: old 864, new 864
New start: 0