No. words: 1639; after pruning: 1613


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 16.7 (1,1:778)  748  0.00 0.00 0.00  USDA034F_E02_BE518358Ta13P035F06P017H101F1_008.ab1        1   777 (36)  C USDA034R_E02_BE518358Ta13P035F06P017H101R1_008.ab1   (47)   779     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  390 nodes

 197 str. conn. components

Path
    1  C USDA034R_E02_BE518358Ta13P035F06P017H101R1_008.ab1   826 
   56    USDA034F_E02_BE518358Ta13P035F06P017H101F1_008.ab1     9 
   64  C USDA034R_E02_BE518358Ta13P035F06P017H101R1_008.ab1   763 
   68    USDA034F_E02_BE518358Ta13P035F06P017H101F1_008.ab1    21 
   84  C USDA034R_E02_BE518358Ta13P035F06P017H101R1_008.ab1   743 
   88    USDA034F_E02_BE518358Ta13P035F06P017H101F1_008.ab1    41 
  100  C USDA034R_E02_BE518358Ta13P035F06P017H101R1_008.ab1   727 
  104    USDA034F_E02_BE518358Ta13P035F06P017H101F1_008.ab1    57 
  128  C USDA034R_E02_BE518358Ta13P035F06P017H101R1_008.ab1   699 
  132    USDA034F_E02_BE518358Ta13P035F06P017H101F1_008.ab1    85 
  136  C USDA034R_E02_BE518358Ta13P035F06P017H101R1_008.ab1   691 
  148    USDA034F_E02_BE518358Ta13P035F06P017H101F1_008.ab1   101 
  156  C USDA034R_E02_BE518358Ta13P035F06P017H101R1_008.ab1   671 
  216    USDA034F_E02_BE518358Ta13P035F06P017H101F1_008.ab1   169 
  224  C USDA034R_E02_BE518358Ta13P035F06P017H101R1_008.ab1   603 
  228    USDA034F_E02_BE518358Ta13P035F06P017H101F1_008.ab1   181 
  264  C USDA034R_E02_BE518358Ta13P035F06P017H101R1_008.ab1   563 
  268    USDA034F_E02_BE518358Ta13P035F06P017H101F1_008.ab1   221 
  280  C USDA034R_E02_BE518358Ta13P035F06P017H101R1_008.ab1   547 
  284    USDA034F_E02_BE518358Ta13P035F06P017H101F1_008.ab1   237 
  288  C USDA034R_E02_BE518358Ta13P035F06P017H101R1_008.ab1   539 
  812    USDA034F_E02_BE518358Ta13P035F06P017H101F1_008.ab1   765 
  816  C USDA034R_E02_BE518358Ta13P035F06P017H101R1_008.ab1    11 
  820    USDA034F_E02_BE518358Ta13P035F06P017H101F1_008.ab1   773 
Contig length: old 860, new 860

Contig length: old 860, new 860
New start: 0