No. words: 1360; after pruning: 1334


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.3 (1,1:764)  552  0.86 0.00 0.00  USDA029F_E08_BE518358Ta13P043E12P017H101F1_056.ab1        1   583 (0)  C USDA029R_E08_BE518358Ta13P043E12P017H101R1_056.ab1   (12)   765   183 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  280 nodes

 142 str. conn. components

Path
    1  C USDA029R_E08_BE518358Ta13P043E12P017H101R1_056.ab1   777 
   16    USDA029F_E08_BE518358Ta13P043E12P017H101F1_056.ab1     4 
   24  C USDA029R_E08_BE518358Ta13P043E12P017H101R1_056.ab1   754 
   28    USDA029F_E08_BE518358Ta13P043E12P017H101F1_056.ab1    16 
   79  C USDA029R_E08_BE518358Ta13P043E12P017H101R1_056.ab1   699 
   83    USDA029F_E08_BE518358Ta13P043E12P017H101F1_056.ab1    71 
   91  C USDA029R_E08_BE518358Ta13P043E12P017H101R1_056.ab1   687 
   95    USDA029F_E08_BE518358Ta13P043E12P017H101F1_056.ab1    83 
  168  C USDA029R_E08_BE518358Ta13P043E12P017H101R1_056.ab1   610 
  172    USDA029F_E08_BE518358Ta13P043E12P017H101F1_056.ab1   160 
  180  C USDA029R_E08_BE518358Ta13P043E12P017H101R1_056.ab1   598 
  188    USDA029F_E08_BE518358Ta13P043E12P017H101F1_056.ab1   176 
  196  C USDA029R_E08_BE518358Ta13P043E12P017H101R1_056.ab1   582 
  204    USDA029F_E08_BE518358Ta13P043E12P017H101F1_056.ab1   192 
  224  C USDA029R_E08_BE518358Ta13P043E12P017H101R1_056.ab1   554 
  232    USDA029F_E08_BE518358Ta13P043E12P017H101F1_056.ab1   220 
  284  C USDA029R_E08_BE518358Ta13P043E12P017H101R1_056.ab1   494 
  288    USDA029F_E08_BE518358Ta13P043E12P017H101F1_056.ab1   276 
  308  C USDA029R_E08_BE518358Ta13P043E12P017H101R1_056.ab1   470 
  312    USDA029F_E08_BE518358Ta13P043E12P017H101F1_056.ab1   300 
  324  C USDA029R_E08_BE518358Ta13P043E12P017H101R1_056.ab1   454 
  332    USDA029F_E08_BE518358Ta13P043E12P017H101F1_056.ab1   320 
  336  C USDA029R_E08_BE518358Ta13P043E12P017H101R1_056.ab1   442 
  340    USDA029F_E08_BE518358Ta13P043E12P017H101F1_056.ab1   328 
  368  C USDA029R_E08_BE518358Ta13P043E12P017H101R1_056.ab1   410 
  376    USDA029F_E08_BE518358Ta13P043E12P017H101F1_056.ab1   364 
  392  C USDA029R_E08_BE518358Ta13P043E12P017H101R1_056.ab1   386 
  400    USDA029F_E08_BE518358Ta13P043E12P017H101F1_056.ab1   388 
  404  C USDA029R_E08_BE518358Ta13P043E12P017H101R1_056.ab1   374 
  412    USDA029F_E08_BE518358Ta13P043E12P017H101F1_056.ab1   400 
  416  C USDA029R_E08_BE518358Ta13P043E12P017H101R1_056.ab1   362 
  424    USDA029F_E08_BE518358Ta13P043E12P017H101F1_056.ab1   412 
  444  C USDA029R_E08_BE518358Ta13P043E12P017H101R1_056.ab1   334 
  488    USDA029F_E08_BE518358Ta13P043E12P017H101F1_056.ab1   476 
  492  C USDA029R_E08_BE518358Ta13P043E12P017H101R1_056.ab1   286 
Contig length: old 777, new 777

Contig length: old 777, new 777
New start: 0 
S Change at: 563; seg lengths: entry 1, contig 1