No. words: 1628; after pruning: 1602


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.1 (1,1:770)  742  0.00 0.00 0.00  USDA034F_F02_BE518358Ta14P035F06P017H101F1_006.ab1        1   771 (33)  C USDA034R_F02_BE518358Ta14P035F06P017H101R1_006.ab1   (53)   771     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  388 nodes

 196 str. conn. components

Path
    1  C USDA034R_F02_BE518358Ta14P035F06P017H101R1_006.ab1   824 
   61    USDA034F_F02_BE518358Ta14P035F06P017H101F1_006.ab1     8 
   65  C USDA034R_F02_BE518358Ta14P035F06P017H101R1_006.ab1   760 
   77    USDA034F_F02_BE518358Ta14P035F06P017H101F1_006.ab1    24 
   85  C USDA034R_F02_BE518358Ta14P035F06P017H101R1_006.ab1   740 
   97    USDA034F_F02_BE518358Ta14P035F06P017H101F1_006.ab1    44 
  109  C USDA034R_F02_BE518358Ta14P035F06P017H101R1_006.ab1   716 
  117    USDA034F_F02_BE518358Ta14P035F06P017H101F1_006.ab1    64 
  133  C USDA034R_F02_BE518358Ta14P035F06P017H101R1_006.ab1   692 
  137    USDA034F_F02_BE518358Ta14P035F06P017H101F1_006.ab1    84 
  141  C USDA034R_F02_BE518358Ta14P035F06P017H101R1_006.ab1   684 
  209    USDA034F_F02_BE518358Ta14P035F06P017H101F1_006.ab1   156 
  213  C USDA034R_F02_BE518358Ta14P035F06P017H101R1_006.ab1   612 
  221    USDA034F_F02_BE518358Ta14P035F06P017H101F1_006.ab1   168 
  229  C USDA034R_F02_BE518358Ta14P035F06P017H101R1_006.ab1   596 
  233    USDA034F_F02_BE518358Ta14P035F06P017H101F1_006.ab1   180 
  245  C USDA034R_F02_BE518358Ta14P035F06P017H101R1_006.ab1   580 
  249    USDA034F_F02_BE518358Ta14P035F06P017H101F1_006.ab1   196 
  285  C USDA034R_F02_BE518358Ta14P035F06P017H101R1_006.ab1   540 
  289    USDA034F_F02_BE518358Ta14P035F06P017H101F1_006.ab1   236 
  301  C USDA034R_F02_BE518358Ta14P035F06P017H101R1_006.ab1   524 
  713    USDA034F_F02_BE518358Ta14P035F06P017H101F1_006.ab1   660 
  717  C USDA034R_F02_BE518358Ta14P035F06P017H101R1_006.ab1   108 
  721    USDA034F_F02_BE518358Ta14P035F06P017H101F1_006.ab1   668 
  729  C USDA034R_F02_BE518358Ta14P035F06P017H101R1_006.ab1    96 
  777    USDA034F_F02_BE518358Ta14P035F06P017H101F1_006.ab1   724 
  785  C USDA034R_F02_BE518358Ta14P035F06P017H101R1_006.ab1    40 
  821    USDA034F_F02_BE518358Ta14P035F06P017H101F1_006.ab1   768 
Contig length: old 857, new 857

Contig length: old 857, new 857
New start: 0