No. words: 1440; after pruning: 1414


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 9.4 (1,1:675)  581  0.81 0.00 0.00  USDA034F_H02_BE518358Ta16P035F06P017H101F1_002.ab1       58   676 (140)  C USDA034R_H02_BE518358Ta16P035F06P017H101R1_002.ab1   (5)   619     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  302 nodes

 153 str. conn. components

Path
    1    USDA034F_H02_BE518358Ta16P035F06P017H101F1_002.ab1     1 
  233  C USDA034R_H02_BE518358Ta16P035F06P017H101R1_002.ab1   444 
  237    USDA034F_H02_BE518358Ta16P035F06P017H101F1_002.ab1   237 
  313  C USDA034R_H02_BE518358Ta16P035F06P017H101R1_002.ab1   364 
  321    USDA034F_H02_BE518358Ta16P035F06P017H101F1_002.ab1   321 
  405  C USDA034R_H02_BE518358Ta16P035F06P017H101R1_002.ab1   272 
  409    USDA034F_H02_BE518358Ta16P035F06P017H101F1_002.ab1   409 
  425  C USDA034R_H02_BE518358Ta16P035F06P017H101R1_002.ab1   252 
  433    USDA034F_H02_BE518358Ta16P035F06P017H101F1_002.ab1   433 
  437  C USDA034R_H02_BE518358Ta16P035F06P017H101R1_002.ab1   240 
  445    USDA034F_H02_BE518358Ta16P035F06P017H101F1_002.ab1   445 
  449  C USDA034R_H02_BE518358Ta16P035F06P017H101R1_002.ab1   228 
  457    USDA034F_H02_BE518358Ta16P035F06P017H101F1_002.ab1   457 
  469  C USDA034R_H02_BE518358Ta16P035F06P017H101R1_002.ab1   208 
  473    USDA034F_H02_BE518358Ta16P035F06P017H101F1_002.ab1   473 
  501  C USDA034R_H02_BE518358Ta16P035F06P017H101R1_002.ab1   176 
  525    USDA034F_H02_BE518358Ta16P035F06P017H101F1_002.ab1   525 
  529  C USDA034R_H02_BE518358Ta16P035F06P017H101R1_002.ab1   148 
  533    USDA034F_H02_BE518358Ta16P035F06P017H101F1_002.ab1   533 
  537  C USDA034R_H02_BE518358Ta16P035F06P017H101R1_002.ab1   140 
  561    USDA034F_H02_BE518358Ta16P035F06P017H101F1_002.ab1   561 
  569  C USDA034R_H02_BE518358Ta16P035F06P017H101R1_002.ab1   108 
  601    USDA034F_H02_BE518358Ta16P035F06P017H101F1_002.ab1   601 
  617  C USDA034R_H02_BE518358Ta16P035F06P017H101R1_002.ab1    60 
  641    USDA034F_H02_BE518358Ta16P035F06P017H101F1_002.ab1   641 
  645  C USDA034R_H02_BE518358Ta16P035F06P017H101R1_002.ab1    32 
  657    USDA034F_H02_BE518358Ta16P035F06P017H101F1_002.ab1   657 
Contig length: old 816, new 816

Contig length: old 816, new 816
New start: 0