No. words: 1642; after pruning: 1602


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 16.6 (1,1:786)  751  0.26 0.00 0.00  USDA034F_A03_BE518358Ta17P035F06P017H101F1_031.ab1        1   784 (36)  C USDA034R_A03_BE518358Ta17P035F06P017H101R1_031.ab1   (35)   787     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  388 nodes

 196 str. conn. components

Path
    1  C USDA034R_A03_BE518358Ta17P035F06P017H101R1_031.ab1   822 
   39    USDA034F_A03_BE518358Ta17P035F06P017H101F1_031.ab1     4 
  147  C USDA034R_A03_BE518358Ta17P035F06P017H101R1_031.ab1   676 
  151    USDA034F_A03_BE518358Ta17P035F06P017H101F1_031.ab1   116 
  175  C USDA034R_A03_BE518358Ta17P035F06P017H101R1_031.ab1   648 
  203    USDA034F_A03_BE518358Ta17P035F06P017H101F1_031.ab1   168 
  207  C USDA034R_A03_BE518358Ta17P035F06P017H101R1_031.ab1   616 
  211    USDA034F_A03_BE518358Ta17P035F06P017H101F1_031.ab1   176 
  219  C USDA034R_A03_BE518358Ta17P035F06P017H101R1_031.ab1   604 
  235    USDA034F_A03_BE518358Ta17P035F06P017H101F1_031.ab1   200 
  319  C USDA034R_A03_BE518358Ta17P035F06P017H101R1_031.ab1   504 
  323    USDA034F_A03_BE518358Ta17P035F06P017H101F1_031.ab1   288 
  331  C USDA034R_A03_BE518358Ta17P035F06P017H101R1_031.ab1   492 
  371    USDA034F_A03_BE518358Ta17P035F06P017H101F1_031.ab1   336 
  375  C USDA034R_A03_BE518358Ta17P035F06P017H101R1_031.ab1   448 
  383    USDA034F_A03_BE518358Ta17P035F06P017H101F1_031.ab1   348 
  387  C USDA034R_A03_BE518358Ta17P035F06P017H101R1_031.ab1   436 
  423    USDA034F_A03_BE518358Ta17P035F06P017H101F1_031.ab1   388 
  431  C USDA034R_A03_BE518358Ta17P035F06P017H101R1_031.ab1   392 
  530    USDA034F_A03_BE518358Ta17P035F06P017H101F1_031.ab1   495 
  534  C USDA034R_A03_BE518358Ta17P035F06P017H101R1_031.ab1   289 
  634    USDA034F_A03_BE518358Ta17P035F06P017H101F1_031.ab1   599 
  638  C USDA034R_A03_BE518358Ta17P035F06P017H101R1_031.ab1   185 
  807    USDA034F_A03_BE518358Ta17P035F06P017H101F1_031.ab1   772 
Contig length: old 855, new 855

Contig length: old 855, new 855
New start: 0