No. words: 1633; after pruning: 1607


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   12    0.0 15.4 (1,1:777)  737  0.00 0.00 0.00  USDA034F_D03_BE518358Ta20P035F06P017H101F1_025.ab1        1   766 (44)  C USDA034R_D03_BE518358Ta20P035F06P017H101R1_025.ab1   (45)   778    13 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
12       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  384 nodes

 194 str. conn. components

Path
    1  C USDA034R_D03_BE518358Ta20P035F06P017H101R1_025.ab1   823 
   50    USDA034F_D03_BE518358Ta20P035F06P017H101F1_025.ab1     5 
  134  C USDA034R_D03_BE518358Ta20P035F06P017H101R1_025.ab1   690 
  138    USDA034F_D03_BE518358Ta20P035F06P017H101F1_025.ab1    93 
  150  C USDA034R_D03_BE518358Ta20P035F06P017H101R1_025.ab1   674 
  158    USDA034F_D03_BE518358Ta20P035F06P017H101F1_025.ab1   113 
  162  C USDA034R_D03_BE518358Ta20P035F06P017H101R1_025.ab1   662 
  218    USDA034F_D03_BE518358Ta20P035F06P017H101F1_025.ab1   173 
  226  C USDA034R_D03_BE518358Ta20P035F06P017H101R1_025.ab1   598 
  230    USDA034F_D03_BE518358Ta20P035F06P017H101F1_025.ab1   185 
  234  C USDA034R_D03_BE518358Ta20P035F06P017H101R1_025.ab1   590 
  238    USDA034F_D03_BE518358Ta20P035F06P017H101F1_025.ab1   193 
  258  C USDA034R_D03_BE518358Ta20P035F06P017H101R1_025.ab1   566 
  262    USDA034F_D03_BE518358Ta20P035F06P017H101F1_025.ab1   217 
  346  C USDA034R_D03_BE518358Ta20P035F06P017H101R1_025.ab1   478 
  386    USDA034F_D03_BE518358Ta20P035F06P017H101F1_025.ab1   341 
  406  C USDA034R_D03_BE518358Ta20P035F06P017H101R1_025.ab1   418 
  462    USDA034F_D03_BE518358Ta20P035F06P017H101F1_025.ab1   417 
  466  C USDA034R_D03_BE518358Ta20P035F06P017H101R1_025.ab1   358 
  786    USDA034F_D03_BE518358Ta20P035F06P017H101F1_025.ab1   741 
  790  C USDA034R_D03_BE518358Ta20P035F06P017H101R1_025.ab1    34 
  806    USDA034F_D03_BE518358Ta20P035F06P017H101F1_025.ab1   761 
Contig length: old 855, new 855

Contig length: old 855, new 855
New start: 0