No. words: 1385; after pruning: 1359


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.4 (1,1:763)  568  1.31 0.00 0.00  USDA029F_D09_BE518358Ta20P043E12P017H101F1_073.ab1        1   610 (0)  C USDA029R_D09_BE518358Ta20P043E12P017H101R1_073.ab1   (11)   764   155 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  284 nodes

 144 str. conn. components

Path
    1  C USDA029R_D09_BE518358Ta20P043E12P017H101R1_073.ab1   775 
   19    USDA029F_D09_BE518358Ta20P043E12P017H101F1_073.ab1     8 
   90  C USDA029R_D09_BE518358Ta20P043E12P017H101R1_073.ab1   686 
   94    USDA029F_D09_BE518358Ta20P043E12P017H101F1_073.ab1    83 
  192  C USDA029R_D09_BE518358Ta20P043E12P017H101R1_073.ab1   584 
  196    USDA029F_D09_BE518358Ta20P043E12P017H101F1_073.ab1   185 
  316  C USDA029R_D09_BE518358Ta20P043E12P017H101R1_073.ab1   460 
  320    USDA029F_D09_BE518358Ta20P043E12P017H101F1_073.ab1   309 
  332  C USDA029R_D09_BE518358Ta20P043E12P017H101R1_073.ab1   444 
  336    USDA029F_D09_BE518358Ta20P043E12P017H101F1_073.ab1   325 
  384  C USDA029R_D09_BE518358Ta20P043E12P017H101R1_073.ab1   392 
  392    USDA029F_D09_BE518358Ta20P043E12P017H101F1_073.ab1   381 
  400  C USDA029R_D09_BE518358Ta20P043E12P017H101R1_073.ab1   376 
  412    USDA029F_D09_BE518358Ta20P043E12P017H101F1_073.ab1   401 
  431  C USDA029R_D09_BE518358Ta20P043E12P017H101R1_073.ab1   345 
Contig length: old 775, new 775

Contig length: old 775, new 775
New start: 0