No. words: 1598; after pruning: 1558


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 15.0 (1,1:759)  723  0.13 0.00 0.13  USDA029F_A07_BE518358Td01P043E12P017H101F1_063.ab1        1   757 (31)  C USDA029R_A07_BE518358Td01P043E12P017H101R1_063.ab1   (51)   759     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  376 nodes

 190 str. conn. components

Path
    1  C USDA029R_A07_BE518358Td01P043E12P017H101R1_063.ab1   810 
   71    USDA029F_A07_BE518358Td01P043E12P017H101F1_063.ab1    20 
  131  C USDA029R_A07_BE518358Td01P043E12P017H101R1_063.ab1   680 
  135    USDA029F_A07_BE518358Td01P043E12P017H101F1_063.ab1    84 
  179  C USDA029R_A07_BE518358Td01P043E12P017H101R1_063.ab1   632 
  183    USDA029F_A07_BE518358Td01P043E12P017H101F1_063.ab1   132 
  211  C USDA029R_A07_BE518358Td01P043E12P017H101R1_063.ab1   600 
  215    USDA029F_A07_BE518358Td01P043E12P017H101F1_063.ab1   164 
  227  C USDA029R_A07_BE518358Td01P043E12P017H101R1_063.ab1   584 
  235    USDA029F_A07_BE518358Td01P043E12P017H101F1_063.ab1   184 
  451  C USDA029R_A07_BE518358Td01P043E12P017H101R1_063.ab1   360 
  455    USDA029F_A07_BE518358Td01P043E12P017H101F1_063.ab1   404 
  491  C USDA029R_A07_BE518358Td01P043E12P017H101R1_063.ab1   320 
  595    USDA029F_A07_BE518358Td01P043E12P017H101F1_063.ab1   544 
  599  C USDA029R_A07_BE518358Td01P043E12P017H101R1_063.ab1   212 
  667    USDA029F_A07_BE518358Td01P043E12P017H101F1_063.ab1   616 
  671  C USDA029R_A07_BE518358Td01P043E12P017H101R1_063.ab1   140 
  791    USDA029F_A07_BE518358Td01P043E12P017H101F1_063.ab1   740 
Contig length: old 838, new 839

Contig length: old 839, new 839
New start: 0