No. words: 1588; after pruning: 1562


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.7 (1,1:761)  721  0.39 0.00 0.13  USDA029F_C07_BE518358Td03P043E12P017H101F1_059.ab1        1   762 (21)  C USDA029R_C07_BE518358Td03P043E12P017H101R1_059.ab1   (44)   761     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  372 nodes

 188 str. conn. components

Path
    1  C USDA029R_C07_BE518358Td03P043E12P017H101R1_059.ab1   805 
   56    USDA029F_C07_BE518358Td03P043E12P017H101F1_059.ab1    12 
  231  C USDA029R_C07_BE518358Td03P043E12P017H101R1_059.ab1   575 
  235    USDA029F_C07_BE518358Td03P043E12P017H101F1_059.ab1   191 
  259  C USDA029R_C07_BE518358Td03P043E12P017H101R1_059.ab1   547 
  263    USDA029F_C07_BE518358Td03P043E12P017H101F1_059.ab1   219 
  355  C USDA029R_C07_BE518358Td03P043E12P017H101R1_059.ab1   451 
  359    USDA029F_C07_BE518358Td03P043E12P017H101F1_059.ab1   315 
  383  C USDA029R_C07_BE518358Td03P043E12P017H101R1_059.ab1   423 
  391    USDA029F_C07_BE518358Td03P043E12P017H101F1_059.ab1   347 
  395  C USDA029R_C07_BE518358Td03P043E12P017H101R1_059.ab1   411 
  403    USDA029F_C07_BE518358Td03P043E12P017H101F1_059.ab1   359 
  407  C USDA029R_C07_BE518358Td03P043E12P017H101R1_059.ab1   399 
  463    USDA029F_C07_BE518358Td03P043E12P017H101F1_059.ab1   419 
  471  C USDA029R_C07_BE518358Td03P043E12P017H101R1_059.ab1   335 
  591    USDA029F_C07_BE518358Td03P043E12P017H101F1_059.ab1   547 
  595  C USDA029R_C07_BE518358Td03P043E12P017H101R1_059.ab1   211 
  802    USDA029F_C07_BE518358Td03P043E12P017H101F1_059.ab1   759 
Contig length: old 826, new 826

Contig length: old 826, new 826
New start: 0