No. words: 1350; after pruning: 1324


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.7 (1,1:765)  555  0.68 0.00 0.00  USDA029F_H07_BE518358Td08P043E12P017H101F1_049.ab1       56   639 (0)  C USDA029R_H07_BE518358Td08P043E12P017H101R1_049.ab1   (0)   711   128 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  280 nodes

 142 str. conn. components

Path
    1    USDA029F_H07_BE518358Td08P043E12P017H101F1_049.ab1     1 
  167  C USDA029R_H07_BE518358Td08P043E12P017H101R1_049.ab1   600 
  171    USDA029F_H07_BE518358Td08P043E12P017H101F1_049.ab1   171 
  310  C USDA029R_H07_BE518358Td08P043E12P017H101R1_049.ab1   457 
  314    USDA029F_H07_BE518358Td08P043E12P017H101F1_049.ab1   314 
  334  C USDA029R_H07_BE518358Td08P043E12P017H101R1_049.ab1   433 
  338    USDA029F_H07_BE518358Td08P043E12P017H101F1_049.ab1   338 
  394  C USDA029R_H07_BE518358Td08P043E12P017H101R1_049.ab1   373 
  398    USDA029F_H07_BE518358Td08P043E12P017H101F1_049.ab1   398 
  445  C USDA029R_H07_BE518358Td08P043E12P017H101R1_049.ab1   322 
  472    USDA029F_H07_BE518358Td08P043E12P017H101F1_049.ab1   472 
  480  C USDA029R_H07_BE518358Td08P043E12P017H101R1_049.ab1   287 
  548    USDA029F_H07_BE518358Td08P043E12P017H101F1_049.ab1   548 
  556  C USDA029R_H07_BE518358Td08P043E12P017H101R1_049.ab1   211 
  620    USDA029F_H07_BE518358Td08P043E12P017H101F1_049.ab1   620 
  624  C USDA029R_H07_BE518358Td08P043E12P017H101R1_049.ab1   143 
Contig length: old 766, new 766

Contig length: old 766, new 766
New start: 0