No. words: 1053; after pruning: 1027


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    6    0.0 6.6 (1,1:368)  356  0.00 0.28 0.00  USDA013F_G03_BE518403Ld01P032A02P032A08F1_019.ab1        8   369 (143)  C USDA013R_G03_BE518403Ld01P032A02P032A08R1_019.ab1   (178)   363     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 6       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  180 nodes

 92 str. conn. components

Path
    1  C USDA013R_G03_BE518403Ld01P032A02P032A08R1_019.ab1   541 
  413    USDA013F_G03_BE518403Ld01P032A02P032A08F1_019.ab1   241 
Contig length: old 684, new 684

Contig length: old 684, new 684
New start: 0