No. words: 1054; after pruning: 1028


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 7.6 (1,1:384)  379  0.00 0.00 0.00  USDA002F_A10_BE586140Ld03P004C04C10F1_069.ab1        1   382 (126)  C USDA002R_A10_BE586140Ld03P004C04C10R1_069.ab1   (161)   385     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  192 nodes

 98 str. conn. components

Path
    1  C USDA002R_A10_BE586140Ld03P004C04C10R1_069.ab1   546 
  373    USDA002F_A10_BE586140Ld03P004C04C10F1_069.ab1   212 
  385  C USDA002R_A10_BE586140Ld03P004C04C10R1_069.ab1   162 
  445    USDA002F_A10_BE586140Ld03P004C04C10F1_069.ab1   284 
  449  C USDA002R_A10_BE586140Ld03P004C04C10R1_069.ab1    98 
  473    USDA002F_A10_BE586140Ld03P004C04C10F1_069.ab1   312 
  521  C USDA002R_A10_BE586140Ld03P004C04C10R1_069.ab1    26 
  525    USDA002F_A10_BE586140Ld03P004C04C10F1_069.ab1   364 
Contig length: old 669, new 669

Contig length: old 669, new 669
New start: 0