No. words: 1055; after pruning: 1029


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.3 (1,1:376)  375  0.00 0.00 0.00  USDA002F_B10_BE586140Ld04P004C04C10F1_077.ab1        1   377 (135)  C USDA002R_B10_BE586140Ld04P004C04C10R1_077.ab1   (166)   377     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  190 nodes

 97 str. conn. components

Path
    1  C USDA002R_B10_BE586140Ld04P004C04C10R1_077.ab1   543 
  370    USDA002F_B10_BE586140Ld04P004C04C10F1_077.ab1   204 
  390  C USDA002R_B10_BE586140Ld04P004C04C10R1_077.ab1   154 
  398    USDA002F_B10_BE586140Ld04P004C04C10F1_077.ab1   232 
  402  C USDA002R_B10_BE586140Ld04P004C04C10R1_077.ab1   142 
  418    USDA002F_B10_BE586140Ld04P004C04C10F1_077.ab1   252 
  426  C USDA002R_B10_BE586140Ld04P004C04C10R1_077.ab1   118 
  434    USDA002F_B10_BE586140Ld04P004C04C10F1_077.ab1   268 
  458  C USDA002R_B10_BE586140Ld04P004C04C10R1_077.ab1    86 
  474    USDA002F_B10_BE586140Ld04P004C04C10F1_077.ab1   308 
Contig length: old 678, new 678

Contig length: old 678, new 678
New start: 0