No. words: 943; after pruning: 917


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.2 (1,1:422)  404  0.00 0.24 0.00  USDA005R3_E09_BE637864At01P004D04D10R3_071.ab1        1   423 (50)  C USDA005F3_E09_BE637864At01P004D04D10F3_071.ab1   (46)   424     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  208 nodes

 106 str. conn. components

Path
    1  C USDA005F3_E09_BE637864At01P004D04D10F3_071.ab1   470 
   73    USDA005R3_E09_BE637864At01P004D04D10R3_071.ab1    26 
   77  C USDA005F3_E09_BE637864At01P004D04D10F3_071.ab1   394 
   85    USDA005R3_E09_BE637864At01P004D04D10R3_071.ab1    38 
  105  C USDA005F3_E09_BE637864At01P004D04D10F3_071.ab1   366 
  113    USDA005R3_E09_BE637864At01P004D04D10R3_071.ab1    66 
  117  C USDA005F3_E09_BE637864At01P004D04D10F3_071.ab1   354 
  125    USDA005R3_E09_BE637864At01P004D04D10R3_071.ab1    78 
  129  C USDA005F3_E09_BE637864At01P004D04D10F3_071.ab1   342 
  133    USDA005R3_E09_BE637864At01P004D04D10R3_071.ab1    86 
  201  C USDA005F3_E09_BE637864At01P004D04D10F3_071.ab1   270 
  205    USDA005R3_E09_BE637864At01P004D04D10R3_071.ab1   158 
Contig length: old 520, new 520

Contig length: old 520, new 520
New start: 0