No. words: 1002; after pruning: 976


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.6 (1,1:460)  437  0.00 0.43 0.00  USDA020F_F05_BF291549Ta14P043C02P032B091F1_037.ab1        1   460 (38)  C USDA020R_F05_BF291549Ta14P043C02P032B091R1_037.ab1   (42)   462     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  228 nodes

 116 str. conn. components

Path
    1  C USDA020R_F05_BF291549Ta14P043C02P032B091R1_037.ab1   504 
  410    USDA020F_F05_BF291549Ta14P043C02P032B091F1_037.ab1   366 
  422  C USDA020R_F05_BF291549Ta14P043C02P032B091R1_037.ab1    83 
  442    USDA020F_F05_BF291549Ta14P043C02P032B091F1_037.ab1   398 
  446  C USDA020R_F05_BF291549Ta14P043C02P032B091R1_037.ab1    59 
  482    USDA020F_F05_BF291549Ta14P043C02P032B091F1_037.ab1   438 
Contig length: old 541, new 542

Contig length: old 542, new 542
New start: 0