No. words: 1344; after pruning: 1318


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.8 (1,1:1142)  185  1.99 0.00 0.00  USDA027F_G12_BF474569Sn32P035H09P017G091F1_084.ab1      455   655 (0)  C USDA027R_G12_BF474569Sn32P035H09P017G091R1_084.ab1   (0)   689   489 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  88 nodes

 46 str. conn. components

Path
    1    USDA027F_G12_BF474569Sn32P035H09P017G091F1_084.ab1     1 
  595  C USDA027R_G12_BF474569Sn32P035H09P017G091R1_084.ab1   549 
  599    USDA027F_G12_BF474569Sn32P035H09P017G091F1_084.ab1   599 
  603  C USDA027R_G12_BF474569Sn32P035H09P017G091R1_084.ab1   541 
  615    USDA027F_G12_BF474569Sn32P035H09P017G091F1_084.ab1   615 
  623  C USDA027R_G12_BF474569Sn32P035H09P017G091R1_084.ab1   521 
Contig length: old 1143, new 1143

Contig length: old 1143, new 1143
New start: 0