No. words: 1526; after pruning: 1500


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.3 (1,1:732)  725  0.00 0.00 0.14  USDA023F_E07_BF474569Td05P043A11P017G091F1_055.ab1        1   733 (41)  C USDA023R_E07_BF474569Td05P043A11P017G091R1_055.ab1   (20)   732     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  364 nodes

 184 str. conn. components

Path
    1  C USDA023R_E07_BF474569Td05P043A11P017G091R1_055.ab1   752 
   24    USDA023F_E07_BF474569Td05P043A11P017G091F1_055.ab1     4 
  120  C USDA023R_E07_BF474569Td05P043A11P017G091R1_055.ab1   633 
  124    USDA023F_E07_BF474569Td05P043A11P017G091F1_055.ab1   104 
  196  C USDA023R_E07_BF474569Td05P043A11P017G091R1_055.ab1   557 
  212    USDA023F_E07_BF474569Td05P043A11P017G091F1_055.ab1   192 
  364  C USDA023R_E07_BF474569Td05P043A11P017G091R1_055.ab1   389 
  384    USDA023F_E07_BF474569Td05P043A11P017G091F1_055.ab1   364 
  408  C USDA023R_E07_BF474569Td05P043A11P017G091R1_055.ab1   345 
  488    USDA023F_E07_BF474569Td05P043A11P017G091F1_055.ab1   468 
  492  C USDA023R_E07_BF474569Td05P043A11P017G091R1_055.ab1   261 
  560    USDA023F_E07_BF474569Td05P043A11P017G091F1_055.ab1   540 
  564  C USDA023R_E07_BF474569Td05P043A11P017G091R1_055.ab1   189 
  746    USDA023F_E07_BF474569Td05P043A11P017G091F1_055.ab1   727 
Contig length: old 793, new 793

Contig length: old 793, new 794
New start: 0 
I Change at: 705; seg lengths: entry 1, contig 0