No. words: 1531; after pruning: 1505


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 13.3 (1,1:880)  633  0.46 0.00 0.00  USDA027F_B08_BF474569Td10P035F09P017G091F1_062.ab1       50   695 (4)  C USDA027R_B08_BF474569Td10P035F09P017G091R1_062.ab1   (0)   832   187 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  314 nodes

 159 str. conn. components

Path
    1    USDA027F_B08_BF474569Td10P035F09P017G091F1_062.ab1     1 
  309  C USDA027R_B08_BF474569Td10P035F09P017G091R1_062.ab1   573 
  313    USDA027F_B08_BF474569Td10P035F09P017G091F1_062.ab1   313 
  337  C USDA027R_B08_BF474569Td10P035F09P017G091R1_062.ab1   545 
  345    USDA027F_B08_BF474569Td10P035F09P017G091F1_062.ab1   345 
  349  C USDA027R_B08_BF474569Td10P035F09P017G091R1_062.ab1   533 
  353    USDA027F_B08_BF474569Td10P035F09P017G091F1_062.ab1   353 
  373  C USDA027R_B08_BF474569Td10P035F09P017G091R1_062.ab1   509 
Contig length: old 881, new 881

Contig length: old 881, new 881
New start: 0