No. words: 319; after pruning: 293


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -0.6 -0.6 (1,1:111)   95  0.00 1.77 1.77  USDA023F_B12_BF475149Sn27P043A09P017E121F1_094.ab1        1   113 (44)  C USDA023R_B12_BF475149Sn27P043A09P017E121R1_094.ab1   (49)   113     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-0.6       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  46 nodes

 25 str. conn. components

Path
    1  C USDA023R_B12_BF475149Sn27P043A09P017E121R1_094.ab1   162 
   96    USDA023F_B12_BF475149Sn27P043A09P017E121F1_094.ab1    45 
  120  C USDA023R_B12_BF475149Sn27P043A09P017E121R1_094.ab1    43 
  128    USDA023F_B12_BF475149Sn27P043A09P017E121F1_094.ab1    77 
Contig length: old 207, new 208

Contig length: old 208, new 208
New start: 0