No. words: 551; after pruning: 525


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    3   -3.2 -3.2 (1,1:230)  198  0.44 0.88 1.32  USDA026F_A02_BF475149Td09P035A10P017E121F1_016.ab1        1   228 (43)  C USDA026R_A02_BF475149Td09P035A10P017E121R1_016.ab1   (48)   232     6 *
  Worst pair: offset 0 
LLR breakdown: discreps: -7.8 (<20 part: -2.8 (#=4), >20:-5.0 (#=2); in HQ: -7.8, out HQ 0.0), match: 5.0  trail: -0.4  total: -3.2  198  0.44 0.88 1.32  USDA026F_A02_BF475149Td09P035A10P017E121F1_016.ab1        1   228 (43)  C USDA026R_A02_BF475149Td09P035A10P017E121R1_016.ab1   (48)   232     6 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-3.2       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  102 nodes

 53 str. conn. components

Path
    1  C USDA026R_A02_BF475149Td09P035A10P017E121R1_016.ab1   280 
   75    USDA026F_A02_BF475149Td09P035A10P017E121F1_016.ab1    25 
   91  C USDA026R_A02_BF475149Td09P035A10P017E121R1_016.ab1   190 
   99    USDA026F_A02_BF475149Td09P035A10P017E121F1_016.ab1    49 
  123  C USDA026R_A02_BF475149Td09P035A10P017E121R1_016.ab1   158 
  253    USDA026F_A02_BF475149Td09P035A10P017E121F1_016.ab1   203 
Contig length: old 320, new 321

Contig length: old 321, new 321
New start: 0