No. words: 1683; after pruning: 1657


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.7 (1,1:973)  695  0.00 0.00 0.00  USDA012F_G10_BF478387Ld09P004D06P004D12F1_068.ab1      105   813 (0)  C USDA012R_G10_BF478387Ld09P004D06P004D12R1_068.ab1   (0)   870   162 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  356 nodes

 180 str. conn. components

Path
    1    USDA012F_G10_BF478387Ld09P004D06P004D12F1_068.ab1     1 
  596  C USDA012R_G10_BF478387Ld09P004D06P004D12R1_068.ab1   379 
Contig length: old 974, new 974

Contig length: old 974, new 974
New start: 0