No. words: 1161; after pruning: 1135


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 0.5 (1,1:1120)   34  0.00 0.00 0.00  USDA012F_H10_BF478387Ld10P004D06P004D12F1_066.ab1      220   254 (5)  C USDA012R_H10_BF478387Ld10P004D06P004D12R1_066.ab1   (0)   902   868 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  20 nodes

 12 str. conn. components

Path
    1    USDA012F_H10_BF478387Ld10P004D06P004D12F1_066.ab1     1 
  251  C USDA012R_H10_BF478387Ld10P004D06P004D12R1_066.ab1   871 
Contig length: old 1121, new 1121

Contig length: old 1121, new 1121
New start: 0