No. words: 1584; after pruning: 1544


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 14.9 (1,1:775)  736  0.13 0.13 0.13  USDA015F_G02_BF478387Ta15P029E02P004D121F1_004.ab1        3   773 (28)  C USDA015R_G02_BF478387Ta15P029E02P004D121R1_004.ab1   (9)   774     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  376 nodes

 190 str. conn. components

Path
    1  C USDA015R_G02_BF478387Ta15P029E02P004D121R1_004.ab1   783 
   21    USDA015F_G02_BF478387Ta15P029E02P004D121F1_004.ab1    14 
   25  C USDA015R_G02_BF478387Ta15P029E02P004D121R1_004.ab1   759 
   37    USDA015F_G02_BF478387Ta15P029E02P004D121F1_004.ab1    29 
   72  C USDA015R_G02_BF478387Ta15P029E02P004D121R1_004.ab1   712 
   80    USDA015F_G02_BF478387Ta15P029E02P004D121F1_004.ab1    72 
  164  C USDA015R_G02_BF478387Ta15P029E02P004D121R1_004.ab1   620 
  568    USDA015F_G02_BF478387Ta15P029E02P004D121F1_004.ab1   560 
  576  C USDA015R_G02_BF478387Ta15P029E02P004D121R1_004.ab1   208 
  632    USDA015F_G02_BF478387Ta15P029E02P004D121F1_004.ab1   624 
  636  C USDA015R_G02_BF478387Ta15P029E02P004D121R1_004.ab1   148 
  756    USDA015F_G02_BF478387Ta15P029E02P004D121F1_004.ab1   748 
Contig length: old 808, new 809

Contig length: old 809, new 809
New start: 0