No. words: 1485; after pruning: 1445


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 13.6 (1,1:752)  685  0.14 0.14 0.00  USDA015F_A03_BF478387Ta17P029E02P004D121F1_031.ab1        6   720 (0)  C USDA015R_A03_BF478387Ta17P029E02P004D121R1_031.ab1   (16)   749    34 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  352 nodes

 178 str. conn. components

Path
    1  C USDA015R_A03_BF478387Ta17P029E02P004D121R1_031.ab1   765 
   40    USDA015F_A03_BF478387Ta17P029E02P004D121F1_031.ab1    28 
   79  C USDA015R_A03_BF478387Ta17P029E02P004D121R1_031.ab1   687 
   83    USDA015F_A03_BF478387Ta17P029E02P004D121F1_031.ab1    71 
  151  C USDA015R_A03_BF478387Ta17P029E02P004D121R1_031.ab1   615 
  159    USDA015F_A03_BF478387Ta17P029E02P004D121F1_031.ab1   147 
  167  C USDA015R_A03_BF478387Ta17P029E02P004D121R1_031.ab1   599 
  259    USDA015F_A03_BF478387Ta17P029E02P004D121F1_031.ab1   247 
  435  C USDA015R_A03_BF478387Ta17P029E02P004D121R1_031.ab1   331 
  571    USDA015F_A03_BF478387Ta17P029E02P004D121F1_031.ab1   559 
  587  C USDA015R_A03_BF478387Ta17P029E02P004D121R1_031.ab1   179 
Contig length: old 765, new 765

Contig length: old 765, new 765
New start: 0