No. words: 1485; after pruning: 1431


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    7    0.0 14.5 (1,1:755)  689  0.28 0.00 0.00  USDA015F_D01_BF478387Td04P029E02P004D121F1_009.ab1        8   723 (0)  C USDA015R_D01_BF478387Td04P029E02P004D121R1_009.ab1   (13)   749    34 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 7       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  352 nodes

 178 str. conn. components

Path
    1  C USDA015R_D01_BF478387Td04P029E02P004D121R1_009.ab1   762 
   17    USDA015F_D01_BF478387Td04P029E02P004D121F1_009.ab1    11 
   33  C USDA015R_D01_BF478387Td04P029E02P004D121R1_009.ab1   730 
   37    USDA015F_D01_BF478387Td04P029E02P004D121F1_009.ab1    31 
  192  C USDA015R_D01_BF478387Td04P029E02P004D121R1_009.ab1   571 
  240    USDA015F_D01_BF478387Td04P029E02P004D121F1_009.ab1   234 
  268  C USDA015R_D01_BF478387Td04P029E02P004D121R1_009.ab1   495 
  632    USDA015F_D01_BF478387Td04P029E02P004D121F1_009.ab1   626 
  636  C USDA015R_D01_BF478387Td04P029E02P004D121R1_009.ab1   127 
  672    USDA015F_D01_BF478387Td04P029E02P004D121F1_009.ab1   666 
  676  C USDA015R_D01_BF478387Td04P029E02P004D121R1_009.ab1    87 
Contig length: old 762, new 762

Contig length: old 762, new 762
New start: 0