No. words: 1572; after pruning: 1518


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 15.0 (1,1:761)  715  0.26 0.26 0.26  USDA015F_B02_BF478387Td10P029E02P004D121F1_014.ab1        3   763 (34)  C USDA015R_B02_BF478387Td10P029E02P004D121R1_014.ab1   (14)   761     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  364 nodes

 184 str. conn. components

Path
    1  C USDA015R_B02_BF478387Td10P029E02P004D121R1_014.ab1   775 
   38    USDA015F_B02_BF478387Td10P029E02P004D121F1_014.ab1    24 
   73  C USDA015R_B02_BF478387Td10P029E02P004D121R1_014.ab1   703 
   81    USDA015F_B02_BF478387Td10P029E02P004D121F1_014.ab1    67 
   89  C USDA015R_B02_BF478387Td10P029E02P004D121R1_014.ab1   687 
   93    USDA015F_B02_BF478387Td10P029E02P004D121F1_014.ab1    79 
  149  C USDA015R_B02_BF478387Td10P029E02P004D121R1_014.ab1   627 
  153    USDA015F_B02_BF478387Td10P029E02P004D121F1_014.ab1   139 
  165  C USDA015R_B02_BF478387Td10P029E02P004D121R1_014.ab1   611 
  233    USDA015F_B02_BF478387Td10P029E02P004D121F1_014.ab1   219 
  273  C USDA015R_B02_BF478387Td10P029E02P004D121R1_014.ab1   503 
  605    USDA015F_B02_BF478387Td10P029E02P004D121F1_014.ab1   591 
  609  C USDA015R_B02_BF478387Td10P029E02P004D121R1_014.ab1   167 
  756    USDA015F_B02_BF478387Td10P029E02P004D121F1_014.ab1   742 
Contig length: old 810, new 811

Contig length: old 811, new 811
New start: 0