No. words: 1425; after pruning: 1399


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 12.0 (1,1:554)  547  0.00 0.00 0.00  USDA010F_E04_BG314157Ld07P017F02P017F08F1_024.ab1        3   555 (142)  C USDA010R_E04_BG314157Ld07P017F02P017F08R1_024.ab1   (175)   553     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  278 nodes

 141 str. conn. components

Path
    1  C USDA010R_E04_BG314157Ld07P017F02P017F08R1_024.ab1   728 
  235    USDA010F_E04_BG314157Ld07P017F02P017F08F1_024.ab1    62 
  243  C USDA010R_E04_BG314157Ld07P017F02P017F08R1_024.ab1   486 
  271    USDA010F_E04_BG314157Ld07P017F02P017F08F1_024.ab1    98 
  275  C USDA010R_E04_BG314157Ld07P017F02P017F08R1_024.ab1   454 
  307    USDA010F_E04_BG314157Ld07P017F02P017F08F1_024.ab1   134 
  319  C USDA010R_E04_BG314157Ld07P017F02P017F08R1_024.ab1   410 
  375    USDA010F_E04_BG314157Ld07P017F02P017F08F1_024.ab1   202 
  639  C USDA010R_E04_BG314157Ld07P017F02P017F08R1_024.ab1    90 
  659    USDA010F_E04_BG314157Ld07P017F02P017F08F1_024.ab1   486 
Contig length: old 870, new 870

Contig length: old 870, new 870
New start: 0