No. words: 1075; after pruning: 1049


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 7.6 (1,1:379)  370  0.00 0.26 0.26  USDA005R3_C08_BG314205Ld05P004C03C09R3_060.ab1        2   380 (148)  C USDA005F3_C08_BG314205Ld05P004C03C09F3_060.ab1   (168)   379     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  186 nodes

 95 str. conn. components

Path
    1  C USDA005F3_C08_BG314205Ld05P004C03C09F3_060.ab1   547 
  462    USDA005R3_C08_BG314205Ld05P004C03C09R3_060.ab1   294 
Contig length: old 695, new 696

Contig length: old 696, new 696
New start: 0