No. words: 1622; after pruning: 1582


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.7 (1,1:797)  736  0.26 0.00 0.13  USDA012F_A08_BG604540Ld03P004E06P004E12F1_064.ab1        1   763 (0)  C USDA012R_A08_BG604540Ld03P004E06P004E12R1_064.ab1   (62)   797    36 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  378 nodes

 191 str. conn. components

Path
    1  C USDA012R_A08_BG604540Ld03P004E06P004E12R1_064.ab1   859 
   66    USDA012F_A08_BG604540Ld03P004E06P004E12F1_064.ab1     4 
  118  C USDA012R_A08_BG604540Ld03P004E06P004E12R1_064.ab1   742 
  125    USDA012F_A08_BG604540Ld03P004E06P004E12F1_064.ab1    64 
  201  C USDA012R_A08_BG604540Ld03P004E06P004E12R1_064.ab1   659 
  205    USDA012F_A08_BG604540Ld03P004E06P004E12F1_064.ab1   144 
  209  C USDA012R_A08_BG604540Ld03P004E06P004E12R1_064.ab1   651 
  213    USDA012F_A08_BG604540Ld03P004E06P004E12F1_064.ab1   152 
  253  C USDA012R_A08_BG604540Ld03P004E06P004E12R1_064.ab1   607 
  257    USDA012F_A08_BG604540Ld03P004E06P004E12F1_064.ab1   196 
  269  C USDA012R_A08_BG604540Ld03P004E06P004E12R1_064.ab1   591 
  273    USDA012F_A08_BG604540Ld03P004E06P004E12F1_064.ab1   212 
  281  C USDA012R_A08_BG604540Ld03P004E06P004E12R1_064.ab1   579 
Contig length: old 859, new 859

Contig length: old 859, new 859
New start: 0