No. words: 1460; after pruning: 1434


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.2 (1,1:581)  568  0.00 0.17 0.00  USDA014F_G12_BG607036Ld09P032H03P032H09F1_084.ab1        1   582 (129)  C USDA014R_G12_BG607036Ld09P032H03P032H09R1_084.ab1   (166)   583     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  290 nodes

 147 str. conn. components

Path
    1  C USDA014R_G12_BG607036Ld09P032H03P032H09R1_084.ab1   749 
  196    USDA014F_G12_BG607036Ld09P032H03P032H09F1_084.ab1    29 
  208  C USDA014R_G12_BG607036Ld09P032H03P032H09R1_084.ab1   542 
  216    USDA014F_G12_BG607036Ld09P032H03P032H09F1_084.ab1    49 
  224  C USDA014R_G12_BG607036Ld09P032H03P032H09R1_084.ab1   526 
  576    USDA014F_G12_BG607036Ld09P032H03P032H09F1_084.ab1   409 
  636  C USDA014R_G12_BG607036Ld09P032H03P032H09R1_084.ab1   114 
  652    USDA014F_G12_BG607036Ld09P032H03P032H09F1_084.ab1   485 
  660  C USDA014R_G12_BG607036Ld09P032H03P032H09R1_084.ab1    90 
  672    USDA014F_G12_BG607036Ld09P032H03P032H09F1_084.ab1   505 
  676  C USDA014R_G12_BG607036Ld09P032H03P032H09R1_084.ab1    74 
  704    USDA014F_G12_BG607036Ld09P032H03P032H09F1_084.ab1   537 
  712  C USDA014R_G12_BG607036Ld09P032H03P032H09R1_084.ab1    38 
  732    USDA014F_G12_BG607036Ld09P032H03P032H09F1_084.ab1   565 
Contig length: old 878, new 878

Contig length: old 878, new 878
New start: 0