No. words: 1383; after pruning: 1357


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.7 (1,1:662)  645  0.00 0.00 0.00  USDA003F_D01_BG607230As02P004D05D11F1_010.ab1        1   663 (30)  C USDA003R_D01_BG607230As02P004D05D11R1_010.ab1   (27)   663     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  334 nodes

 169 str. conn. components

Path
    1  C USDA003R_D01_BG607230As02P004D05D11R1_010.ab1   690 
   35    USDA003F_D01_BG607230As02P004D05D11F1_010.ab1     8 
   39  C USDA003R_D01_BG607230As02P004D05D11R1_010.ab1   652 
   43    USDA003F_D01_BG607230As02P004D05D11F1_010.ab1    16 
   55  C USDA003R_D01_BG607230As02P004D05D11R1_010.ab1   636 
   59    USDA003F_D01_BG607230As02P004D05D11F1_010.ab1    32 
  135  C USDA003R_D01_BG607230As02P004D05D11R1_010.ab1   556 
  139    USDA003F_D01_BG607230As02P004D05D11F1_010.ab1   112 
  219  C USDA003R_D01_BG607230As02P004D05D11R1_010.ab1   472 
  223    USDA003F_D01_BG607230As02P004D05D11F1_010.ab1   196 
  227  C USDA003R_D01_BG607230As02P004D05D11R1_010.ab1   464 
  235    USDA003F_D01_BG607230As02P004D05D11F1_010.ab1   208 
  247  C USDA003R_D01_BG607230As02P004D05D11R1_010.ab1   444 
  251    USDA003F_D01_BG607230As02P004D05D11F1_010.ab1   224 
  263  C USDA003R_D01_BG607230As02P004D05D11R1_010.ab1   428 
  267    USDA003F_D01_BG607230As02P004D05D11F1_010.ab1   240 
  283  C USDA003R_D01_BG607230As02P004D05D11R1_010.ab1   408 
  291    USDA003F_D01_BG607230As02P004D05D11F1_010.ab1   264 
  315  C USDA003R_D01_BG607230As02P004D05D11R1_010.ab1   376 
  323    USDA003F_D01_BG607230As02P004D05D11F1_010.ab1   296 
  335  C USDA003R_D01_BG607230As02P004D05D11R1_010.ab1   356 
  343    USDA003F_D01_BG607230As02P004D05D11F1_010.ab1   316 
  347  C USDA003R_D01_BG607230As02P004D05D11R1_010.ab1   344 
  367    USDA003F_D01_BG607230As02P004D05D11F1_010.ab1   340 
  379  C USDA003R_D01_BG607230As02P004D05D11R1_010.ab1   312 
  407    USDA003F_D01_BG607230As02P004D05D11F1_010.ab1   380 
  415  C USDA003R_D01_BG607230As02P004D05D11R1_010.ab1   276 
  579    USDA003F_D01_BG607230As02P004D05D11F1_010.ab1   552 
  583  C USDA003R_D01_BG607230As02P004D05D11R1_010.ab1   108 
  687    USDA003F_D01_BG607230As02P004D05D11F1_010.ab1   660 
Contig length: old 720, new 720

Contig length: old 720, new 720
New start: 0