No. words: 1143; after pruning: 1117


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.0 (1,1:538)  528  0.00 0.00 0.00  USDA003F_E01_BG607230At01P004D05D11F1_003.ab1        1   539 (32)  C USDA003R_E01_BG607230At01P004D05D11R1_003.ab1   (33)   539     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  272 nodes

 138 str. conn. components

Path
    1  C USDA003R_E01_BG607230At01P004D05D11R1_003.ab1   572 
   61    USDA003F_E01_BG607230At01P004D05D11F1_003.ab1    28 
   69  C USDA003R_E01_BG607230At01P004D05D11R1_003.ab1   504 
   73    USDA003F_E01_BG607230At01P004D05D11F1_003.ab1    40 
   93  C USDA003R_E01_BG607230At01P004D05D11R1_003.ab1   480 
   97    USDA003F_E01_BG607230At01P004D05D11F1_003.ab1    64 
  117  C USDA003R_E01_BG607230At01P004D05D11R1_003.ab1   456 
  149    USDA003F_E01_BG607230At01P004D05D11F1_003.ab1   116 
  157  C USDA003R_E01_BG607230At01P004D05D11R1_003.ab1   416 
  165    USDA003F_E01_BG607230At01P004D05D11F1_003.ab1   132 
  177  C USDA003R_E01_BG607230At01P004D05D11R1_003.ab1   396 
  185    USDA003F_E01_BG607230At01P004D05D11F1_003.ab1   152 
  197  C USDA003R_E01_BG607230At01P004D05D11R1_003.ab1   376 
  201    USDA003F_E01_BG607230At01P004D05D11F1_003.ab1   168 
  217  C USDA003R_E01_BG607230At01P004D05D11R1_003.ab1   356 
  221    USDA003F_E01_BG607230At01P004D05D11F1_003.ab1   188 
  225  C USDA003R_E01_BG607230At01P004D05D11R1_003.ab1   348 
  249    USDA003F_E01_BG607230At01P004D05D11F1_003.ab1   216 
  285  C USDA003R_E01_BG607230At01P004D05D11R1_003.ab1   288 
  293    USDA003F_E01_BG607230At01P004D05D11F1_003.ab1   260 
  297  C USDA003R_E01_BG607230At01P004D05D11R1_003.ab1   276 
  301    USDA003F_E01_BG607230At01P004D05D11F1_003.ab1   268 
  345  C USDA003R_E01_BG607230At01P004D05D11R1_003.ab1   228 
  349    USDA003F_E01_BG607230At01P004D05D11F1_003.ab1   316 
  437  C USDA003R_E01_BG607230At01P004D05D11R1_003.ab1   136 
  461    USDA003F_E01_BG607230At01P004D05D11F1_003.ab1   428 
  509  C USDA003R_E01_BG607230At01P004D05D11R1_003.ab1    64 
  521    USDA003F_E01_BG607230At01P004D05D11F1_003.ab1   488 
  537  C USDA003R_E01_BG607230At01P004D05D11R1_003.ab1    36 
  545    USDA003F_E01_BG607230At01P004D05D11F1_003.ab1   512 
Contig length: old 604, new 604

Contig length: old 604, new 604
New start: 0