No. words: 925; after pruning: 899


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 8.3 (1,1:425)  407  0.00 0.00 0.47  USDA028F_H07_BG607230Ta18P035G08P004D051F1_049.ab1        1   424 (39)  C USDA028R_H07_BG607230Ta18P035G08P004D051R1_049.ab1   (38)   424     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  206 nodes

 105 str. conn. components

Path
    1  C USDA028R_H07_BG607230Ta18P035G08P004D051R1_049.ab1   462 
   83    USDA028F_H07_BG607230Ta18P035G08P004D051F1_049.ab1    46 
   91  C USDA028R_H07_BG607230Ta18P035G08P004D051R1_049.ab1   372 
   95    USDA028F_H07_BG607230Ta18P035G08P004D051F1_049.ab1    58 
  143  C USDA028R_H07_BG607230Ta18P035G08P004D051R1_049.ab1   320 
  155    USDA028F_H07_BG607230Ta18P035G08P004D051F1_049.ab1   118 
  291  C USDA028R_H07_BG607230Ta18P035G08P004D051R1_049.ab1   172 
  295    USDA028F_H07_BG607230Ta18P035G08P004D051F1_049.ab1   258 
Contig length: old 499, new 500

Contig length: old 500, new 500
New start: 0