No. words: 1411; after pruning: 1371


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 14.0 (1,1:662)  649  0.15 0.00 0.00  USDA011F_B01_BM140362Tu02P017H02P017H08F1_013.ab1        1   660 (42)  C USDA011R_B01_BM140362Tu02P017H02P017H08R1_013.ab1   (46)   663     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  330 nodes

 167 str. conn. components

Path
    1  C USDA011R_B01_BM140362Tu02P017H02P017H08R1_013.ab1   709 
   82    USDA011F_B01_BM140362Tu02P017H02P017H08F1_013.ab1    36 
   94  C USDA011R_B01_BM140362Tu02P017H02P017H08R1_013.ab1   616 
  222    USDA011F_B01_BM140362Tu02P017H02P017H08F1_013.ab1   176 
  594  C USDA011R_B01_BM140362Tu02P017H02P017H08R1_013.ab1   116 
  634    USDA011F_B01_BM140362Tu02P017H02P017H08F1_013.ab1   588 
  638  C USDA011R_B01_BM140362Tu02P017H02P017H08R1_013.ab1    72 
  654    USDA011F_B01_BM140362Tu02P017H02P017H08F1_013.ab1   608 
  658  C USDA011R_B01_BM140362Tu02P017H02P017H08R1_013.ab1    52 
  682    USDA011F_B01_BM140362Tu02P017H02P017H08F1_013.ab1   636 
Contig length: old 748, new 748

Contig length: old 748, new 748
New start: 0