No. words: 1809; after pruning: 1783


Histogram of relative pair offsets, for read pairs with multiple alignments:
99     6

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.5 (1,1:857)  806  0.12 0.12 0.35  USDA003F_G12_BM585780Ld09P004B05B11F1_088.ab1        1   860 (40)  C USDA003R_G12_BM585780Ld09P004B05B11R1_088.ab1   (51)   858     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  414 nodes

 209 str. conn. components

Path
    1  C USDA003R_G12_BM585780Ld09P004B05B11R1_088.ab1   909 
   73    USDA003F_G12_BM585780Ld09P004B05B11F1_088.ab1    21 
  397  C USDA003R_G12_BM585780Ld09P004B05B11R1_088.ab1   513 
  401    USDA003F_G12_BM585780Ld09P004B05B11F1_088.ab1   349 
  421  C USDA003R_G12_BM585780Ld09P004B05B11R1_088.ab1   489 
  425    USDA003F_G12_BM585780Ld09P004B05B11F1_088.ab1   373 
  437  C USDA003R_G12_BM585780Ld09P004B05B11R1_088.ab1   473 
  441    USDA003F_G12_BM585780Ld09P004B05B11F1_088.ab1   389 
  453  C USDA003R_G12_BM585780Ld09P004B05B11R1_088.ab1   457 
  465    USDA003F_G12_BM585780Ld09P004B05B11F1_088.ab1   413 
  477  C USDA003R_G12_BM585780Ld09P004B05B11R1_088.ab1   433 
  489    USDA003F_G12_BM585780Ld09P004B05B11F1_088.ab1   437 
  493  C USDA003R_G12_BM585780Ld09P004B05B11R1_088.ab1   417 
  497    USDA003F_G12_BM585780Ld09P004B05B11F1_088.ab1   445 
  505  C USDA003R_G12_BM585780Ld09P004B05B11R1_088.ab1   405 
  513    USDA003F_G12_BM585780Ld09P004B05B11F1_088.ab1   461 
  521  C USDA003R_G12_BM585780Ld09P004B05B11R1_088.ab1   389 
  537    USDA003F_G12_BM585780Ld09P004B05B11F1_088.ab1   485 
  541  C USDA003R_G12_BM585780Ld09P004B05B11R1_088.ab1   369 
  609    USDA003F_G12_BM585780Ld09P004B05B11F1_088.ab1   557 
  617  C USDA003R_G12_BM585780Ld09P004B05B11R1_088.ab1   293 
  637    USDA003F_G12_BM585780Ld09P004B05B11F1_088.ab1   585 
  641  C USDA003R_G12_BM585780Ld09P004B05B11R1_088.ab1   269 
  898    USDA003F_G12_BM585780Ld09P004B05B11F1_088.ab1   848 
Contig length: old 951, new 950

Contig length: old 950, new 950
New start: 0 
I Change at: 897; seg lengths: entry 1, contig 0
D Change at: 905; seg lengths: entry 0, contig 1