No. words: 1101; after pruning: 1061


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 3.4 (1,1:524)  477  1.34 0.19 0.19  USDA021F_B01_BM585780Td02P043F04P004B111F1_013.ab1        2   522 (52)  C USDA021R_B01_BM585780Td02P043F04P004B111R1_013.ab1   (3)   524     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  238 nodes

 121 str. conn. components

Path
    1  C USDA021R_B01_BM585780Td02P043F04P004B111R1_013.ab1   527 
   18    USDA021F_B01_BM585780Td02P043F04P004B111F1_013.ab1    15 
   27  C USDA021R_B01_BM585780Td02P043F04P004B111R1_013.ab1   501 
   39    USDA021F_B01_BM585780Td02P043F04P004B111F1_013.ab1    36 
   58  C USDA021R_B01_BM585780Td02P043F04P004B111R1_013.ab1   470 
  388    USDA021F_B01_BM585780Td02P043F04P004B111F1_013.ab1   386 
  392  C USDA021R_B01_BM585780Td02P043F04P004B111R1_013.ab1   136 
  516    USDA021F_B01_BM585780Td02P043F04P004B111F1_013.ab1   514 
Contig length: old 576, new 576

Contig length: old 576, new 576
New start: 0