No. words: 1063; after pruning: 1037


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.9 (1,1:491)  490  0.00 0.00 0.00  KSU008_D06_BE404401At01P009A01A071F1_046.ab1        1   492 (40)  C KSU009_D06_BE404401At01P009A01A071R1_046.ab1   (39)   492     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  248 nodes

 126 str. conn. components

Path
    1  C KSU009_D06_BE404401At01P009A01A071R1_046.ab1   531 
   79    KSU008_D06_BE404401At01P009A01A071F1_046.ab1    40 
   83  C KSU009_D06_BE404401At01P009A01A071R1_046.ab1   449 
   95    KSU008_D06_BE404401At01P009A01A071F1_046.ab1    56 
   99  C KSU009_D06_BE404401At01P009A01A071R1_046.ab1   433 
  115    KSU008_D06_BE404401At01P009A01A071F1_046.ab1    76 
  135  C KSU009_D06_BE404401At01P009A01A071R1_046.ab1   397 
  143    KSU008_D06_BE404401At01P009A01A071F1_046.ab1   104 
  151  C KSU009_D06_BE404401At01P009A01A071R1_046.ab1   381 
  155    KSU008_D06_BE404401At01P009A01A071F1_046.ab1   116 
  171  C KSU009_D06_BE404401At01P009A01A071R1_046.ab1   361 
  179    KSU008_D06_BE404401At01P009A01A071F1_046.ab1   140 
  183  C KSU009_D06_BE404401At01P009A01A071R1_046.ab1   349 
  211    KSU008_D06_BE404401At01P009A01A071F1_046.ab1   172 
  219  C KSU009_D06_BE404401At01P009A01A071R1_046.ab1   313 
  251    KSU008_D06_BE404401At01P009A01A071F1_046.ab1   212 
  267  C KSU009_D06_BE404401At01P009A01A071R1_046.ab1   265 
  279    KSU008_D06_BE404401At01P009A01A071F1_046.ab1   240 
  287  C KSU009_D06_BE404401At01P009A01A071R1_046.ab1   245 
  299    KSU008_D06_BE404401At01P009A01A071F1_046.ab1   260 
  311  C KSU009_D06_BE404401At01P009A01A071R1_046.ab1   221 
  359    KSU008_D06_BE404401At01P009A01A071F1_046.ab1   320 
  371  C KSU009_D06_BE404401At01P009A01A071R1_046.ab1   161 
  379    KSU008_D06_BE404401At01P009A01A071F1_046.ab1   340 
  387  C KSU009_D06_BE404401At01P009A01A071R1_046.ab1   145 
  391    KSU008_D06_BE404401At01P009A01A071F1_046.ab1   352 
  403  C KSU009_D06_BE404401At01P009A01A071R1_046.ab1   129 
  419    KSU008_D06_BE404401At01P009A01A071F1_046.ab1   380 
  427  C KSU009_D06_BE404401At01P009A01A071R1_046.ab1   105 
  451    KSU008_D06_BE404401At01P009A01A071F1_046.ab1   412 
  455  C KSU009_D06_BE404401At01P009A01A071R1_046.ab1    77 
  459    KSU008_D06_BE404401At01P009A01A071F1_046.ab1   420 
  471  C KSU009_D06_BE404401At01P009A01A071R1_046.ab1    61 
  487    KSU008_D06_BE404401At01P009A01A071F1_046.ab1   448 
  495  C KSU009_D06_BE404401At01P009A01A071R1_046.ab1    37 
  499    KSU008_D06_BE404401At01P009A01A071F1_046.ab1   460 
Contig length: old 571, new 571

Contig length: old 571, new 571
New start: 0